Dr Lutz Krause

Bowerman, Kate L., Soo, Rochelle M., Chaumeil, Pierre-Alain, Blyton, Michaela D. J., Sørensen, Mette, Gunbilig, Disan, Malig, Maika, Islam, Moutusee, Zaugg, Julian, Wood, David L. A., Liachko, Ivan, Auch, Benjamin, Morrison, Mark, Krause, Lutz, Lindberg Møller, Birger, Neilson, Elizabeth H. J. and Hugenholtz, Philip (2026). A molecular inventory of the faecal microbiomes of 23 marsupial species. Microbial Genomics, 12 (1) 001601. doi: 10.1099/mgen.0.001601

Parks, Donovan H., Newell, Rhys J. P., Ginn, Andrew N., Bowerman, Kate L., Alsheikh-Hussain, Areej, Fang, Liang, Shah, Sarah, MacDonald, Samantha, Wimpenny, Tristan, Evans, Peter, Arias Guzman, Nadia E., Pribyl, Alena L., Tyson, Gene W., Hugenholtz, Philip, Krause, Lutz, Newcombe, Jim, Griffin, Paul, Wehrhahn, Michael C., Angel, Nicola Z. and Wood, David L. A. (2026). Metagenomics enables parallel detection of 176 clinically relevant targets from faecal samples. Frontiers in Cellular and Infection Microbiology, 16 1759322. doi: 10.3389/fcimb.2026.1759322

Zhou, Joyce, Boyd, Joel A., Nyeverecz, Bozica, Vivian, Charlotte, Angel, Nicola, Wood, David L. A., Hugenholtz, Philip, Tyson, Gene W., Krause, Lutz and Ó Cuív, Páraic (2023). Draft genome sequence of two “Candidatus Intestinicoccus colisanans” strains isolated from faeces of healthy humans. BMC Research Notes, 16 (1) 174, 1-4. doi: 10.1186/s13104-023-06447-3

Yap, Chloe X., Henders, Anjali K., Alvares, Gail A., Wood, David L.A., Krause, Lutz, Tyson, Gene W., Restuadi, Restuadi, Wallace, Leanne, McLaren, Tiana, Hansell, Narelle K., Cleary, Dominique, Grove, Rachel, Hafekost, Claire, Harun, Alexis, Holdsworth, Helen, Jellett, Rachel, Khan, Feroza, Lawson, Lauren P., Leslie, Jodie, Frenk, Mira Levis, Masi, Anne, Mathew, Nisha E., Muniandy, Melanie, Nothard, Michaela, Miller, Jessica L., Nunn, Lorelle, Holtmann, Gerald, Strike, Lachlan T., de Zubicaray, Greig I. ... Gratten, Jacob (2021). Autism-related dietary preferences mediate autism-gut microbiome associations. Cell, 184 (24), 5916-5931.e17. doi: 10.1016/j.cell.2021.10.015

Pribyl, Alena L., Parks, Donovan H., Angel, Nicola Z., Boyd, Joel A., Hasson, Alexander G., Fang, Liang, MacDonald, Samantha L., Wills, Blake A., Wood, David L. A., Krause, Lutz, Tyson, Gene W. and Hugenholtz, Philip (2021). Critical evaluation of faecal microbiome preservation using metagenomic analysis. ISME Communications, 1 (1) 14, 14. doi: 10.1038/s43705-021-00014-2

Parks, Donovan H., Rigato, Fabio, Vera-Wolf, Patricia, Krause, Lutz, Hugenholtz, Philip, Tyson, Gene W. and Wood, David L. A. (2021). Evaluation of the microba community profiler for taxonomic profiling of metagenomic datasets from the human gut microbiome. Frontiers in Microbiology, 12 643682, 1-15. doi: 10.3389/fmicb.2021.643682

Khudhair, Zainab, Alhallaf, Rafid, Eichenberger, Ramon M., Whan, Jen, Kupz, Andreas, Field, Matt, Krause, Lutz, Wilson, David T., Daly, Norelle L., Giacomin, Paul, Sotillo, Javier and Loukas, Alex (2021). Gastrointestinal helminth infection improves insulin sensitivity, decreases systemic inflammation, and alters the composition of gut microbiota in distinct mouse models of Type 2 diabetes. Frontiers in Endocrinology, 11 606530, 1-16. doi: 10.3389/fendo.2020.606530

Yeo, Abrey J., Henningham, Anna, Fantino, Emmanuelle, Galbraith, Sally, Krause, Lutz, Wainwright, Claire E., Sly, Peter D. and Lavin, Martin F. (2020). Author Correction: Increased susceptibility of airway epithelial cells from ataxia-telangiectasia to S. pneumoniae infection due to oxidative damage and impaired innate immunity. Scientific Reports, 10 (1) 12742, 12742. doi: 10.1038/s41598-020-69649-w

Molendijk, Jeffrey, Nguyen, Thi-My-Tam, Brown, Ian, Mohamed, Ahmed, Lim, Yenkai, Barclay, Johanna, Hodson, Mark P., Hennessy, Thomas P., Krause, Lutz, Morrison, Mark and Hill, Michelle M. (2020). Chronic high-fat diet induces early Barrett’s esophagus in mice through lipidome remodeling. Biomolecules, 10 (5) 776, 776. doi: 10.3390/biom10050776

Cortés, Alba, Wills, John, Su, Xiaopei, Hewitt, Rachel E., Robertson, Jack, Scotti, Riccardo, Price, Daniel R. G., Bartley, Yvonne, McNeilly, Tom N., Krause, Lutz, Powell, Jonathan J., Nisbet, Alasdair J. and Cantacessi, Cinzia (2020). Infection with the sheep gastrointestinal nematode Teladorsagia circumcincta increases luminal pathobionts. Microbiome, 8 (1) 60. doi: 10.1186/s40168-020-00818-9

Gordon, Catherine A., Krause, Lutz, McManus, Donald P., Morrison, Mark, Weerakoon, Kosala G., Connor, Mairead C., Olveda, Remigio M., Ross, Allen G. and Gobert, Geoffrey N. (2020). Helminths, polyparasitism, and the gut microbiome in the Philippines. International Journal for Parasitology, 50 (3), 217-225. doi: 10.1016/j.ijpara.2019.12.008

Shukla, Ankit, Nguyen, Thu H. M., Moka, Sarat B., Ellis, Jonathan J., Grady, John P., Oey, Harald, Cristino, Alexandre S., Khanna, Kum Kum, Kroese, Dirk P., Krause, Lutz, Dray, Eloise, Fink, J. Lynn and Duijf, Pascal H. G. (2020). Chromosome arm aneuploidies shape tumour evolution and drug response. Nature Communications, 11 (1) 449, 449. doi: 10.1038/s41467-020-14286-0

Proietti, Carla, Krause, Lutz, Trieu, Angela, Dodoo, Daniel, Gyan, Ben, Koram, Kwadwo A., Rogers, William O., Richie, Thomas L., Crompton, Peter D., Felgner, Philip L. and Doolan, Denise L. (2020). Immune signature against Plasmodium falciparum antigens predicts clinical immunity in distinct malaria endemic communities. Molecular and Cellular Proteomics, 19 (1), 101-113. doi: 10.1074/mcp.RA118.001256

Coghill, Anna E., Proietti, Carla, Liu, Zhiwei, Krause, Lutz, Bethony, Jeff, Prokunina-Olsson, Ludmila, Obajemu, Adeola, Nkrumah, Francis, Biggar, Robert J., Bhatia, Kishor, Hildesheim, Allan, Doolan, Denise L. and Mbulaiteye, Sam M. (2020). The association between the comprehensive Epstein–Barr virus serologic profile and endemic Burkitt lymphoma. Cancer Epidemiology Biomarkers and Prevention, 29 (1), 57-62. doi: 10.1158/1055-9965.EPI-19-0551

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz and Davies, Peter S. W. (2019). Microbiota and body composition during the period of complementary feeding. Journal of Pediatric Gastroenterology and Nutrition, 69 (6), 726-732. doi: 10.1097/MPG.0000000000002490

O'Farrell, Hannah E., Shaw, Janet G., Goh, Felicia, Bowman, Rayleen, Fong, Kwun M., Krause, Lutz and Yang, Ian A. (2019). Potential clinical utility of multiple target quantitative polymerase chain reaction (qPCR) array to detect microbial pathogens in patients with chronic obstructive pulmonary disease (COPD). Journal of Thoracic Disease, 11 (S17), S2254-+. doi: 10.21037/jtd.2019.10.39

Oey, Harald, Daniels, Marissa, Relan, Vandana, Chee, Tian Mun, Davidson, Morgan R., Yang, Ian A., Ellis, Jonathan J., Fong, Kwun M., Krause, Lutz and Bowman, Rayleen V. (2019). Whole-genome sequencing of human malignant mesothelioma tumours and cell lines. Carcinogenesis, 40 (6), 724-734. doi: 10.1093/carcin/bgz066

Jenkins, Timothy P., Formenti, Fabio, Castro, Cecilia, Piubelli, Chiara, Perandin, Francesca, Buonfrate, Dora, Otranto, Domenico, Griffin, Julian L., Krause, Lutz, Bisoffi, Zeno and Cantacessi, Cinzia (2019). Author Correction: a comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area. Scientific Reports, 9 (1) 8571, 8571. doi: 10.1038/s41598-019-43508-9

Murtaza, Nida, Burke, Louise, Vlahovich, Nicole, Charlesson, Bronwen, O’Neill, Hayley, Ross, Megan, Campbell, Katrina, Krause, Lutz and Morrison, Mark (2019). Analysis of the effects of dietary pattern on the oral microbiome of elite endurance athletes. Nutrients, 11 (3) 614, 614. doi: 10.3390/nu11030614

Yeo, Abrey J., Henningham, Anna, Fantino, Emmanuelle, Galbraith, Sally, Krause, Lutz, Wainwright, Claire E., Sly, Peter D. and Lavin, Martin F. (2019). Increased susceptibility of airway epithelial cells from ataxia-telangiectasia to S. pneumoniae infection due to oxidative damage and impaired innate immunity. Scientific Reports, 9 (1) 2627, 2627. doi: 10.1038/s41598-019-38901-3

Newell, Felicity, Patel, Kalpana, Gartside, Michael, Krause, Lutz, Brosda, Sandra, Aoude, Lauren G., Loffler, Kelly A., Bonazzi, Vanessa F., Patch, Ann-Marie, Kazakoff, Stephen H., Holmes, Oliver, Xu, Qinying, Wood, Scott, Leonard, Conrad, Lampe, Guy, Lord, Reginald V., Whiteman, David C., Pearson, John V., Nones, Katia, Waddell, Nicola and Barbour, Andrew P. (2019). Complex structural rearrangements are present in high-grade dysplastic Barrett's oesophagus samples. BMC Medical Genomics, 12 (1) 31, 31. doi: 10.1186/s12920-019-0476-9

Murtaza, Nida, Burke, Louise, Vlahovich, Nicole, Charlesson, Bronwen, O’ Neill, Hayley, Ross, Megan, Campbell, Katrina, Krause, Lutz and Morrison, Mark (2019). The effects of dietary pattern during intensified training on stool microbiota of elite race walkers. Nutrients, 11 (2) 261, 261. doi: 10.3390/nu11020261

Oey, Harald, Zakrzewski, Martha, Gravermann, Kerstin, Young, Neil D., Korhonen, Pasi K., Gobert, Geoffrey N., Nawaratna, Sujeevi, Hasan, Shihab, Martínez, David M., You, Hong, Lavin, Martin, Jones, Malcolm K., Ragan, Mark A., Stoye, Jens, Oleaga, Ana, Emery, Aidan M., Webster, Bonnie, Rollinson, David, Gasser, Robin B., McManus, Donald P. and Krause, Lutz (2019). Whole-genome sequence of the bovine blood fluke Schistosoma bovis supports interspecific hybridization with S. haematobium. PLOS Pathogens, 15 (1) e1007513, e1007513. doi: 10.1371/journal.ppat.1007513

Oey, Harald, Zakrzewski, Martha, Narain, Kanwar, Devi, K Rekha, Agatsuma, Takeshi, Nawaratna, Sujeevi, Gobart, Geoffrey, Jones, Malcolm, Ragan, Mark A, McManus, Donald P and Krause, Lutz (2018). Whole-genome sequence of the oriental lung fluke Paragonimus westermani. GigaScience, 8 (1). doi: 10.1093/gigascience/giy146

Jenkins, Timothy P., Formenti, Fabio, Castro, Cecilia, Piubelli, Chiara, Perandin, Francesca, Buonfrate, Dora, Otranto, Domenico, Griffin, Julian L., Krause, Lutz, Bisoffi, Zeno and Cantacessi, Cinzia (2018). A comprehensive analysis of the faecal microbiome and metabolome of Strongyloides stercoralis infected volunteers from a non-endemic area. Scientific Reports, 8 (1) 15651, 15651. doi: 10.1038/s41598-018-33937-3

Waterhouse, Mary, Hope, Bronwyn, Krause, Lutz, Morrison, Mark, Protani, Melinda M., Zakrzewski, Martha and Neale, Rachel E. (2018). Vitamin D and the gut microbiome: a systematic review of in vivo studies. European Journal of Nutrition, 58 (7), 2895-2910. doi: 10.1007/s00394-018-1842-7

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz, Newby, Ruth and Davies, Peter Sw (2018). Growth and protein-rich food intake in infancy is associated with fat-free mass index at 2-3 years of age. Journal of Paediatrics and Child Health, 54 (7), 770-775. doi: 10.1111/jpc.13863

Liu, Zhiwei, Coghill, Anna E., Pfeiffer, Ruth M., Proietti, Carla, Hsu, Wan-Lun, Chien, Yin-Chu, Lekieffre, Lea, Krause, Lutz, Yu, Kelly J., Lou, Pei-Jen, Wang, Cheng-Ping, Mulvenna, Jason, Middeldorp, Jaap M., Bethony, Jeff, Chen, Chien-Jen, Doolan, Denise L. and Hildesheim, Allan (2018). Patterns of interindividual variability in the antibody repertoire targeting proteins across the Epstein-Barr virus proteome. The Journal of Infectious Diseases, 217 (12), 1923-1931. doi: 10.1093/infdis/jiy122

Zakrzewski, Martha, Rašić, Gordana, Darbro, Jonathan, Krause, Lutz, Poo, Yee S., Filipović, Igor, Parry, Rhys, Asgari, Sassan, Devine, Greg and Suhrbier, Andreas (2018). Mapping the virome in wild-caught Aedes aegypti from Cairns and Bangkok. Scientific Reports, 8 (1) 4690, 4690. doi: 10.1038/s41598-018-22945-y

Coghill, Anna E., Pfeiffer, Ruth M., Proietti, Carla, Hsu, Wan-Lun, Chien, Yin-Chu, Lekieffre, Lea, Krause, Lutz, Teng, Andy, Pablo, Jocelyn, Yu, Kelly J., Lou, Pei-Jen, Wang, Cheng-Ping, Liu, Zhiwei, Chen, Chien-Jen, Middeldorp, Jaap, Mulvenna, Jason, Bethony, Jeff, Hildesheim, Allan and Doolan, Denise L. (2018). Identification of a Novel, EBV-based antibody risk stratification signature for early detection of nasopharyngeal carcinoma in Taiwan. Clinical Cancer Research, 24 (6), 1305-1314. doi: 10.1158/1078-0432.CCR-17-1929

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz and Davies, Peter S. W. (2018). Male-specific association between fat-free mass index and fecal microbiota in 2- to 3-year-old Australian children. Journal of Pediatric Gastroenterology and Nutrition, 66 (1), 147-151. doi: 10.1097/MPG.0000000000001780

Jenkins, Timothy P., Rathnayaka, Yasara, Perera, Piyumali K., Peachey, Laura E., Nolan, Matthew J., Krause, Lutz, Rajakaruna, Rupika S. and Cantacessi, Cinzia (2017). Infections by human gastrointestinal helminths are associated with changes in faecal microbiota diversity and composition. PLoS One, 12 (9) e0184719, e0184719. doi: 10.1371/journal.pone.0184719

Dewar, Meagan L., Arnould, John P. Y., Allnutt, Theo R., Crowley, Tamsyn, Krause, Lutz, Reynolds, John, Dann, Peter and Smith, Stuart C. (2017). Microbiota of little penguins and short-tailed shearwaters during development. PLoS One, 12 (8) e0183117, e0183117. doi: 10.1371/journal.pone.0183117

Li, Li, Krause, Lutz and Somerset, Shawn (2017). Associations between micronutrient intakes and gut microbiota in a group of adults with cystic fibrosis. Clinical Nutrition, 36 (4), 1097-1104. doi: 10.1016/j.clnu.2016.06.029

Zakrzewski, Martha, Proietti, Carla, Ellis, Jonathan J., Hasan, Shihab, Brion, Marie-Jo, Berger, Bernard and Krause, Lutz (2017). Calypso: a user-friendly web-server for mining and visualizing microbiome-environment interactions. Bioinformatics, 33 (5), 782-783. doi: 10.1093/bioinformatics/btw725

Proietti, Carla, Zakrzewski, Martha, Watkins, Thomas S., Berger, Bernard, Hasan, Shihab, Ratnatunga, Champa N., Brion, Marie-Jo, Crompton, Peter D., Miles, John J., Doolan, Denise L. and Krause, Lutz (2016). Mining, visualizing and comparing multidimensional biomolecular data using the Genomics Data Miner (GMine) web-server. Scientific Reports, 6 (1) 38178. doi: 10.1038/srep38178

Giacomin, Paul, Zakrzewski, Martha, Jenkins, Timothy P., Su, Xiaopei, Al-Hallaf, Rafid, Croese, John, De Vries, Stefan, Grant, Andrew, Mitreva, Makedonka, Loukas, Alex, Krause, Lutz and Cantacessi, Cinzia (2016). Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease. Scientific Reports, 6 (1) 36797, 36797. doi: 10.1038/srep36797

Smith-Brown, P., Morrison, M., Krause, L. and Davies, P. S. W. (2016). Dairy and plant based food intakes are associated with altered faecal microbiota in 2 to 3 year old Australian children. Scientific Reports, 6 (1) 32385, 32385. doi: 10.1038/srep32385

Smith-Brown, Paula, Morrison, Mark, Krause, Lutz and Davies, Peter S. W. (2016). Mothers secretor status affects development of childrens microbiota composition and function: a pilot study. Plos One, 11 (9) e0161211, e0161211. doi: 10.1371/journal.pone.0161211

Rabot, Sylvie, Membrez, Mathieu, Blancher, Florence, Berger, Bernard, Moine, Deborah, Krause, Lutz, Bibiloni, Rodrigo, Bruneau, Aurelia, Gerard, Philippe, Siddharth, Jay, Lauber, Christian L. and Chou, Chieh Jason (2016). High fat diet drives obesity regardless the composition of gut microbiota in mice. Scientific Reports, 6 (1) 32484. doi: 10.1038/srep32484

Merrifield, Claire A., Lewis, Marie C., Berger, Bernard, Cloarec, Olivier, Heinzmann, Silke S., Charton, Florence, Krause, Lutz, Levin, Nadine S., Duncker, Swantje, Mercenier, Annick, Holmes, Elaine, Bailey, Mick and Nicholson, Jeremy K. (2016). Neonatal environment exerts a sustained influence on the development of the intestinal microbiota and metabolic phenotype. ISME Journal, 10 (1), 145-157. doi: 10.1038/ismej.2015.90

Youngson, Neil A., Lecomte, Virginie, Maloney, Christopher A., Leung, Preston, Liu, Jia, Hesson, Luke B., Luciani, Fabio, Krause, Lutz and Morris, Margaret J. (2015). Obesity-induced sperm DNA methylation changes at satellite repeats are reprogrammed in rat offspring. Asian Journal of Andrology, 18 (6), 1-7. doi: 10.4103/1008-682X.163190

Ainsworth, Tracy D., Krause, Lutz, Bridge, Thomas, Torda, Gergely, Raina, Jean-Baptise, Zakrzewski, Martha, Gates, Ruth D., Padilla-Gamino, Jacqueline L., Spalding, Heather L., Smith, Celia, Woolsey, Erika S., Bourne, David G., Bongaerts, Pim, Hoegh-Guldberg, Ove and Leggat, William (2015). The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts. The ISME Journal, 9 (10), 2261-2274. doi: 10.1038/ismej.2015.39

Giacomin, Paul, Zakrzewski, Martha, Croese, John, Su, Xiaopei, Sotillo, Javier, McCann, Leisa, Navarro, Severine, Mitreva, Makedonka, Krause, Lutz, Loukas, Alex and Cantacessi, Cinzia (2015). Experimental hookworm infection and escalating gluten challenges are associated with increased microbial richness in celiac subjects. Scientific Reports, 5 (Art No.: 13797) 13797, 13797. doi: 10.1038/srep13797

Giacomin, Paul, Croese, John, Krause, Lutz, Loukas, Alex and Cantacessi, Cinzia (2015). Suppression of inflammation by helminths: a role for the gut microbiota?. Philosophical Transactions of the Royal Society B: Biological Sciences, 370 (1675) 20140296, 20140296. doi: 10.1098/rstb.2014.0296

Cantacessi, Cinzia, Giacomin, Paul, Croese, John, Zakrzewski, Martha, Sotillo, Javier, McCann, Leisa, Nolan, Matthew J., Mitreva, Makedonka, Krause, Lutz and Loukas, Alex (2014). Impact of experimental hookworm infection on the human gut microbiota. The Journal of Infectious Diseases, 210 (9), 1431-1434. doi: 10.1093/infdis/jiu256

Nones, Katia, Waddell, Nicola, Wayte, Nicci, Patch, Ann-Marie, Bailey, Peter, Newell, Felicity, Holmes, Oliver, Fink, J. Lynn, Quinn, Michael C. J., Tang, Yue Hang, Lampe, Guy, Quek, Kelly, Loffler, Kelly A., Manning, Suzanne, Idrisoglu, Senel, Miller, David, Xu, Qinying, Waddell, Nick, Wilson, Peter J., Bruxner, Timothy J. C., Christ, Angelika N., Harliwong, Ivon, Nourse, Craig, Nourbakhsh, Ehsan, Anderson, Matthew, Kazakoff, Stephen, Leonard, Conrad, Wood, Scott, Simpson, Peter T. ... Barbour, Andrew P. (2014). Genomic catastrophes frequently arise in esophageal adenocarcinoma and drive tumorigenesis. Nature Communications, 5 (1) 6224, 5224.1-5224.9. doi: 10.1038/ncomms6224

Smith, Daniel J., Badrick, Alison C., Zakrzewski, Martha, Krause, Lutz, Bell, Scott C., Anderson, Gregory J. and Reid, David W. (2014). Pyrosequencing reveals transient cystic fibrosis lung microbiome changes with intravenous antibiotics. European Respiratory Journal, 44 (4), 922-930. doi: 10.1183/09031936.00203013

Barbour, Andrew P., Tang, Yue Hang, Armour, Nicola, Dutton-Regester, Ken, Krause, Lutz, Loffler, Kelly A., Lambie, Duncan, Burmeister, Bryan, Thomas, Janine, Smithers, B. Mark and Hayward, Nicholas K. (2014). BRAF mutation status is an independent prognostic factor for resected stage IIIB and IIIC melanoma: implications for melanoma staging and adjuvant therapy. European Journal of Cancer, 50 (15), 2668-2676. doi: 10.1016/j.ejca.2014.06.009

Dewar, Meagan L., Arnould, John P. Y., Krause, Lutz, Dann, Peter and Smith, Stuart C. (2014). Interspecific variations in the faecal microbiota of Procellariiform seabirds. FEMS Microbiology Ecology, 89 (1), 47-55. doi: 10.1111/1574-6941.12332

Zhang, L., Gowardman, J., Morrison, M., Krause, L., Playford, E. G. and Rickard, C. M. (2014). Molecular investigation of bacterial communities on intravascular catheters: no longer just Staphylococcus. European Journal of Clinical Microbiology and Infectious Diseases, 33 (7), 1189-1198. doi: 10.1007/s10096-014-2058-2

Dewar, Meagan L., Arnould, John P. Y., Krause, Lutz, Trathan, Phil, Dann, Peter and Smith, Stuart C. (2014). Influence of fasting during moult on the faecal microbiota of penguins. PLoS ONE, 9 (6) e99996, 1-8. doi: 10.1371/journal.pone.0099996

Swe, Pearl M., Zakrzewski, Martha, Kelly, Andrew, Krause, Lutz and Fischer, Katja (2014). Scabies mites alter the skin microbiome and promote growth of opportunistic pathogens in a porcine model. PLoS Neglected Tropical Diseases, 8 (5) e2897, 1-12. doi: 10.1371/journal.pntd.0002897

Al-Ejeh, F., Simpson, P. T., Sanus, J. M., Klein, K., Kalimutho, M., Shi, W., Miranda, M., Kutasovic, J., Raghavendra, A., Madore, J., Reid, L., Krause, L., Chenevix-Trench, G., Lakhani, S. R. and Khanna, K. K. (2014). Meta-analysis of the global gene expression profile of triple-negative breast cancer identifies genes for the prognostication and treatment of aggressive breast cancer. Oncogenesis, 3 (4) e100, 1-12. doi: 10.1038/oncsis.2014.14

Davies, Matthew N., Krause, Lutz, Bell, Jordana T., Gao, Fei, Ward, Kirsten J., Wu, Honglong, Lu, Hanlin, Liu, Yuan, Tsai, Pei-Chein, Collier, David A., Murphy, Therese, Dempster, Emma, Mill, Jonathan, UK Brain Expression Consortium, Battle, Alexis, Mostafavi, Sara, Zhu, Xiaowei, Henders, Anjali, Byrne, Enda, Wray, Naomi R., Martin, Nicholas G., Spector, Tim D. and Wang, Jun (2014). Hypermethylation in the ZBTB20 gene is associated with major depressive disorder. Genome Biology, 15 (4) R56, R56.1-R56.12. doi: 10.1186/gb-2014-15-4-r56

Frankel, Adam, Armour, Nicola, Nancarrow, Derek, Krause, Lutz, Hayward, Nicholas, Lampe, Guy, Smithers, B. Mark and Barbour, Andrew (2014). Genome-wide analysis of esophageal adenocarcinoma yields specific copy number aberrations that correlate with prognosis. Genes Chromosomes and Cancer, 53 (4), 324-338. doi: 10.1002/gcc.22143

Painter, Jodie N., Nyholt, Dale R, Krause, Lutz, Zhao, Zhen Z., Chapman, Brett, Zhang, Christine, Medland, Sarah, Martin, Nicholas G., Kennedy, Stephen, Treloar, Susan, Zondervan, Krina and Montgomery, Grant W. (2014). Common variants in the CYP2C19 gene are associated with susceptibility to endometriosis. Fertility and Sterility, 102 (2), 496-502.e5. doi: 10.1016/j.fertnstert.2014.04.015

Plieskatt, Jordan L., Deenonpoe, Raksawan, Mulvenna, Jason P., Krause, Lutz, Sripa, Banchob, Bethony, Jeffrey M. and Brindley, Paul J. (2013). Infection with the carcinogenic liver fluke Opisthorchis viverrini modifies intestinal and biliary microbiome. FASEB Journal, 27 (11), 4572-4584. doi: 10.1096/fj.13-232751

McCallin, Shawna, Sarker, Shafiqul Alam, Barretto, Caroline, Sultana, Shamima, Berger, Bernard, Huq, Sayeda, Krause, Lutz, Bibiloni, Rodrigo, Schmitt, Bertrand, Reuteler, Gloria and Bruessow, Harald (2013). Safety analysis of a Russian phage cocktail: from MetaGenomic analysis to oral application in healthy human subjects. Virology, 443 (2), 187-196. doi: 10.1016/j.virol.2013.05.022

Mould, Arne W., Pang, Zhenyi, Pakusch, Miha, Tonks, Ian D., Stark, Mitchell, Carrie, Dianne, Mukhopadhyay, Pamela, Seidel, Annica, Ellis, Jonathan J., Deakin, Janine, Wakefield, Matthew J., Krause, Lutz, Blewitt, Marnie E. and Kay, Graham F. (2013). Smchd1 regulates a subset of autosomal genes subject to monoallelic expression in addition to being critical for X inactivation. Epigenetics and Chromatin, 6 (19) 19, 1-16. doi: 10.1186/1756-8935-6-19

Byrne, E. M., Carrillo-Roa, T., Henders, A. K., Bowdler, L., McRae, A. F., Heath, A. C., Martin, N. G., Montgomery, G. W., Krause, L. and Wray, N. R. (2013). Monozygotic twins affected with major depressive disorder have greater variance in methylation than their unaffected co-twin. Translational Psychiatry, 3 (6) e269, e269.1-e269.6. doi: 10.1038/tp.2013.45

Reis, Mariza G., Roy, Nicole C., Bermingham, Emma N., Ryan, Leigh, Bibiloni, Rodrigo, Young, Wayne, Krause, Lutz, Berger, Bernard, North, Mike, Stelwagen, Kerst and Reis, Marlon M. (2013). Impact of dietary dairy polar lipids on lipid metabolism of mice fed a high-fat diet. Journal of Agricultural and Food Chemistry, 61 (11), 2729-2738. doi: 10.1021/jf303795b

Sarker, Shafiqul Alam, McCallin, Shawna, Barretto, Caroline, Berger, Bernard, Pittet, Anne-Cecile, Sultana, Shamima, Krause, Lutz, Huq, Sayeda, Bibiloni, Rodrigo, Bruttin, Anne, Reuteler, Gloria and Bruessow, Harald (2012). Oral T4-like phage cocktail application to healthy adult volunteers from Bangladesh. Virology, 434 (2), 222-232. doi: 10.1016/j.virol.2012.09.002

Walker, Logan C., Krause, Lutz, kConFab Investigators, Spurdle, Amanda B. and Waddell, Nic (2012). Germline copy number variants are not associated with globally acquired copy number changes in familial breast tumours. Breast Cancer Research and Treatment, 134 (3), 1005-1011. doi: 10.1007/s10549-012-2024-6

Claus, Sandrine P., Ellero, Sandrine L., Berger, Bernard, Krause, Lutz, Bruttin, Anne, Molina, Jerome, Paris, Alain, Want, Elizabeth J., de Waziers, Isabelle, Cloarec, Olivier, Richards, Selena E., Wang, Yulan, Dumas, Marc-Emmanuel, Ross, Alastair, Rezzi, Serge, Kochhar, Sunil, Van Bladeren, Peter, Lindon, John C., Holmes, Elaine and Nicholson, Jeremy K. (2011). Colonization-induced host-gut microbial metabolic interaction. Mbio, 2 (2) e00271-10. doi: 10.1128/mBio.00271-10

Jaenicke, Sebastian, Ander, Christina, Bekel, Thomas, Bisdorf, Regina, Droege, Marcus, Gartemann, Karl-Heinz, Juenemann, Sebastian, Kaiser, Olaf, Krause, Lutz, Tille, Felix, Zakrzewski, Martha, Puehler, Alfred, Schlueter, Andreas and Goesmann, Alexander (2011). Comparative and joint analysis of two metagenomic datasets from a biogas fermenter obtained by 454-pyrosequencing. PLoS ONE, 6 (1) e14519, e14519. doi: 10.1371/journal.pone.0014519

Kussmann, Martin, Krause, Lutz and Siffert, Winfried (2010). Nutrigenomics: where are we with genetic and epigenetic markers for disposition and susceptibility?. Nutrition Reviews, 68 (SUPPL. 1), S38-S47. doi: 10.1111/j.1753-4887.2010.00326.x

Mittard-Runte, Virginie, Bekel, Thomas, Blom, Jochen, Dondrup, Michael, Henckel, Kolja, Jaenicke, Sebastian, Krause, Lutz, Linke, Burkhard, Neuweger, Heiko, Schneiker-Bekel, Susanne and Goesmann, Alexander (2010). Practical Guide: Genomic Techniques and How to Apply Them to Marine Questions. Introduction to Marine Genomics, 315-378. doi: 10.1007/978-90-481-8639-6_9

Kroeber, Magdalena, Bekel, Thomas, Diaz, Naryttza N., Goesmann, Alexander, Jaenicke, Sebastian, Krause, Lutz, Miller, Dimitri, Runte, Kai J., Viehoever, Prisca, Puehler, Alfred and Schlueter, Andreas (2009). Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. Journal of Biotechnology, 142 (1), 38-49. doi: 10.1016/j.jbiotec.2009.02.010

Strittmatter, Axel W., Liesegang, Heiko, Rabus, Ralf, Decker, Iwona, Amann, Judith, Andres, Soenke, Henne, Anke, Fricke, Wolfgang Florian, Martinez-Arias, Rosa, Bartels, Daniela, Goesmann, Alexander, Krause, Lutz, Puehler, Alfred, Klenk, Hans-Peter, Richter, Michael, Schueler, Margarete, Gloeckner, Frank Oliver, Meyerdierks, Anke, Gottschalk, Gerhard and Amann, Rudolf (2009). Genome sequence of Desulfobacterium autotrophicum HRM2, a marine sulfate reducer oxidizing organic carbon completely to carbon dioxide. Environmental Microbiology, 11 (5), 1038-1055. doi: 10.1111/j.1462-2920.2008.01825.x

Diaz, Naryttza N., Krause, Lutz, Goesmann, Alexander, Niehaus, Karsten and Nattkemper, Tim W. (2009). TACOA - taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach. BMC Bioinformatics, 10 (1) 56. doi: 10.1186/1471-2105-10-56

Schlueter, Andreas, Bekel, Thomas, Diaz, Naryttza N., Dondrup, Michael, Eichenlaub, Rudolf, Gartemann, Karl-Heinz, Krahn, Irene, Krause, Lutz, Kroemeke, Holger, Kruse, Olaf, Mussgnug, Jan H., Neuweger, Heiko, Niehaus, Karsten, Puehler, Alfred, Runte, Kai J., Szczepanowski, Rafael, Tauch, Andreas, Tilker, Alexandra, Viehoever, Prisca and Goesmann, Alexander (2008). The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. Journal of Biotechnology, 136 (1-2), 77-90. doi: 10.1016/j.jbiotec.2008.05.008

Schlueter, Andreas, Krause, Lutz, Szczepanowski, Rafael, Goesmann, Alexander and Puehler, Alfred (2008). Genetic diversity and composition of a plasmid metagenome from a wastewater treatment plant. Journal of Biotechnology, 136 (1-2), 65-76. doi: 10.1016/j.jbiotec.2008.03.017

Krause, Lutz, Diaz, Naryttza N., Edwards, Robert A., Gartemann, Karl-Heinz, Kroemeke, Holger, Neuweger, Heiko, Puehler, Alfred, Runte, Kai J., Schlueter, Andreas, Stoye, Jens, Szczepanowski, Rafael, Tauch, Andreas and Goesmann, Alexander (2008). Taxonomic composition and gene content of a methane-producing microbial community isolated from a biogas reactor. Journal of Biotechnology, 136 (1-2), 91-101. doi: 10.1016/j.jbiotec.2008.06.003

Szczepanowski, Rafael, Bekel, Thomas, Goesmann, Alexander, Krause, Lutz, Kroemeke, Holger, Kaiser, Olaf, Eichler, Wolfgang, Puehler, Alfred and Schlueter, Andreas (2008). Insight into the plasmid metagenome of wastewater treatment plant bacteria showing reduced susceptibility to antimicrobial drugs analysed by the 454-pyrosequencing technology. Journal of Biotechnology, 136 (1-2), 54-64. doi: 10.1016/j.jbiotec.2008.03.020

Krause, Lutz, Diaz, Naryttza N., Goesmann, Alexander, Kelley, Scott, Nattkemper, Tim W., Rohwer, Forest, Edwards, Robert A. and Stoye, Jens (2008). Phylogenetic classification of short environmental DNA fragments. Nucleic Acids Research, 36 (7), 2230-2239. doi: 10.1093/nar/gkn038

Vorhoelter, Frank-Joerg, Schneiker, Susanne, Goesmann, Alexander, Krause, Lutz, Bekel, Thomas, Kaiser, Olaf, Linke, Burkhar, Patschkowski, Thomas, Rueckert, Christian, Schmid, Joachim, Sidhu, Vishaldeep Kaur, Sieber, Volker, Tauch, Andreas, Watt, Steven Alexander, Weisshaar, Bemd, Becker, Anke, Niehaus, Karsten and Puehler, Alfred (2008). The genome of Xanthomonas campestris pv. campestris B100 and its use for the reconstruction of metabolic pathways involved in xanthan biosynthesis. Journal of Biotechnology, 134 (1-2), 33-45. doi: 10.1016/j.jbiotec.2007.12.013

Dinsdale, Elizabeth A., Pantos, Olga, Smriga, Steven, Edwards, Robert A., Angly, Florent, Wegley, Linda, Hatay, Mark, Hall, Dana, Brown, Elysa, Haynes, Matthew, Krause, Lutz, Sala, Enric, Sandin, Stuart A., Thurber, Rebecca Vega, Willis, Bette L., Azam, Farooq, Knowlton, Nancy and Rohwer, Forest (2008). Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE, 3 (2) e1584, e1584-1-e1584-17. doi: 10.1371/journal.pone.0001584

Meisinger-Henschel, Christine, Schmidt, Michaela, Lukassen, Susanne, Linke, Burkhard, Krause, Lutz, Konietzny, Sebastian, Goesmann, Alexander, Howley, Paul, Chaplin, Paul, Suter, Mark and Hausmann, Juergen (2007). Genomic sequence of chorioallantois vaccinia virus Ankara, the ancestor of modified vaccinia virus Ankara. Journal of General Virology, 88 (12), 3249-3259. doi: 10.1099/vir.0.83156-0

Schneiker, Susanne, Perlova, Olena, Kaiser, Olaf, Gerth, Klaus, Alici, Aysel, Altmeyer, Matthias O., Bartels, Daniela, Bekel, Thomas, Beyer, Stefan, Bode, Edna, Bode, Helge B., Bolten, Christoph J., Choudhuri, Jomuna V., Doss, Sabrina, Elnakady, Yasser A., Frank, Bettina, Gaigalat, Lars, Goesmann, Alexander, Groeger, Carolin, Gross, Frank, Jelsbak, Lars, Jelsbak, Lotte, Kalinowski, Joern, Kegler, Carsten, Knauber, Tina, Konietzny, Sebastian, Kopp, Maren, Krause, Lutz, Krug, Daniel ... Mueller, Rolf (2007). Complete genome sequence of the myxobacterium Sorangium cellulosum. Nature Biotechnology, 25 (11), 1281-1289. doi: 10.1038/nbt1354

Krause, Lutz, McHardy, Alice C., Nattkemper, Tim W., Puehler, Alfred, Stoye, Jens and Meyer, Folker (2007). GISMO - gene identification using a support vector machine for ORF classification. Nucleic Acids Research, 35 (2), 540-549. doi: 10.1093/nar/gkl1083

Krause, Andrea, Ramakumar, Adarsh, Bartels, Daniela, Battistoni, Federico, Bekel, Thomas, Boch, Jens, Boehm, Melanie, Friedrich, Frauke, Hurek, Thomas, Krause, Lutz, Linke, Burkhard, McHardy, Alice C., Sarkar, Abhijit, Schneiker, Susanne, Syed, Arshad Ali, Thauer, Rudolf, Vorhoelter, Frank-Joerg, Weidner, Stefan, Puehler, Alfred, Reinhold-Hurek, Barbara, Kaiser, Olaf and Goesmann, Alexander (2006). Complete genome of the mutualistic, N2-fixing grass endophyte Azoarcus sp. strain BH72. Nature Biotechnology, 24 (11), 1385-1391. doi: 10.1038/nbt1243

Goesmann, A., Linke, B., Bartels, D., Dondrup, M., Krause, L., Neuweger, H., Oehm, S., Paczian, T., Wilke, A. and Meyer, F. (2005). BRIGEP - the BRIDGE-based genome-transcriptome-proteome browser. Nucleic Acids Research, 33 (S2), W710-W716. doi: 10.1093/nar/gki400

Overbeek, Ross, Begley, Tadhg, Butler, Ralph M., Choudhuri, Jomuna V., Chuang, Han-Yu, Cohoon, Matthew, de Crecy-Lagard, Valerie, Diaz, Naryttza, Disz, Terry, Edwards, Robert, Fonstein, Michael, Frank, Ed D., Gerdes, Svetlana, Glass, Elizabeth M., Goesmann, Alexander, Hanson, Andrew, Iwata-Reuyl, Dirk, Jensen, Roy, Jamshidi, Neema, Krause, Lutz, Kubal, Michael, Larsen, Niels, Linke, Burkhard, McHardy, Alice C., Meyer, Folker, Neuweger, Heiko, Olsen, Gary, Olson, Robert, Osterman, Andrei ... Vonstein, Veronika (2005). The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Research, 33 (17), 5691-5702. doi: 10.1093/nar/gki866

Goesmann, Alexander, Linke, Burkhard, Rupp, Oliver, Krause, Lutz, Bartels, Daniela, Dondrup, Michael, McHardy, Alice C., Wilke, Andreas, Puehler, Alfred and Meyer, Folker (2003). Building a BRIDGE for the integration of heterogeneous data from functional genomics into a platform for systems biology. Journal of Biotechnology, 106 (2-3), 157-167. doi: 10.1016/j.jbiotec.2003.08.007

Dondrup, Michael, Goesmann, Alexander, Bartels, Daniela, Kalinowski, Jörn, Krause, Lutz, Linke, Burkhard, Rupp, Oliver, Sczyrba, Alexander, Puehler, Alfred and Meyer, Folker (2003). EMMA: a platform for consistent storage and efficient analysis of microarray data. Journal of Biotechnology, 106 (2-3), 135-146. doi: 10.1016/j.jbiotec.2003.08.010

Murtaza, Nida, Collins, Lyndal S., Krause, Lutz, Muir, Jane, Gibson, Peter R. and Morrison, Mark (2020). Polyols are a key driver of the bifidobacteria niche expansion and reduced bacterial richness observed with a moderate intake of food-borne prebiotics by healthy Australian subjects. Crohn's and Colitis Congress, Austin, TX USA, 23-25 January 2020. Philadelphia, PA USA: Elsevier.

Cuiv, Paraic O., Krause, Lutz, Wood, David, Hugenholtz, Phil and Tyson, Gene (2020). Fast forward bioprospecting of the gut microbiota for novel live biotherapeutics and anti-inflammatory bioactives. FNM 2020 ‐ 4th Meeting of the Federation of Neurogastroenterology and Motility, Adelaide, SA Australia, 25 - 28 March 2020. Chichester, West Sussex United Kingdom: Wiley-Blackwell.

Barbour, Andrew P., McCormack, Orla M. , Baker, Peter J., Hirst, Jodi, Krause, Lutz, Brosda, Sandra, Thomas, Janine M., Blazeby, Jane M., Thomson, Iain G., Gotley, David C. and Smithers, Bernard M. (2017). Long-term health-related quality of life following esophagectomy: A nonrandomized comparison of thoracoscopically assisted and open surgery. Philadelphia, PA United States: Lippincott Williams & Wilkins. doi: 10.1097/SLA.0000000000001899

Daniels, Marissa G., Krause, Lutz, Ellis, Jonathan J., Yang, Ian A., Bowman, Rayleen V., Relan, Vandana, Chee, Kelly, Goh, Felicia, Parris, Brielle, Morrison, Leanne, Martins, Maria, Passmore, Linda, McCaul, Elizabeth, Courtney, Deborah, Duhig, Edwina, Windsor, Morgan, Naidoo, Rishendran and Fong, Kwun M. (2016). Intratumoral genomic heterogeneity of primary pulmonary adenocarcinoma in never smokers. Meeting of the American-Association-for-Cancer-Research (AACR) Precision Medicine Series - Integrating Clinical Genomics and Cancer Therapy, Salt Lake City, UT, United States, 13-16 June 2015. Philadelphia, PA, United States: Elsevier. doi: 10.1158/1557-3265.PMSCLINGEN15-24

Daniels, Marissa, Krause, Lutz, Ellis, Jonathan, Yang, Ian A., Bowman, Rayleen V., Relan, Vandana, Chee, Kelly, Goh, Felicia, Parris, Brielle, Morrison, Leanne, Martins, Maria, Mccaul, Elizabeth, Passmore, Linda, Courtney, Deborah, Duhig, Edwina, Naidoo, Rishendran, Fong, Kwun and Windsor, Morgan (2015). Inter-, and Intratumoural Genomic Heterogeneity of Primary Pulmonary Adenocarcinoma in Never Smokers. 16th World Conference on Cancer, Denver, CO, United States, 6-9 September 2015. New York, United States: Elsevier.

Smith, D. J., Badrick, A. C., Krause, L., Bell, S. C., Anderson, G. J. and Reid, D. W. (2013). Perturbation of Sputum Microbiota by Intravenous Antibiotics in Cystic Fibrosis Is Short-Lived. 2013 Annual Scientific Meetings of The Thoracic Society of Australia and New Zealand and the Australian and New Zealand Society of Respiratory Science, Darwin, NT Australia, 22 - 27 March 2013. Richmond, VIC Australia: Wiley-Blackwell Publishing Asia. doi: 10.1111/resp.12046

Proietti, Carla, Krause, Lutz, Roddick, Joanne, Trieu, Angela and Doolan, Denise L. (2012). Dissecting T cell or antibody immunodominance in a complex host-pathogen system. Challenges in Malaria Research, Basel, Switzerland, 10-12 October 2012. London, United Kingdom: BioMed Central. doi: 10.1186/1475-2875-11-s1-o23

Krause, Lutz, Diaz, Naryttza N., Bartels, Daniela, Edwards, Robert A., Puehler, Alfred, Rohwer, Forest, Meyer, Folker and Stoye, Jens (2006). Finding novel genes in bacterial communities isolated from the environment. 14th Conference on Intelligent Systems for Molecular Biology, Fortaleza Brazil, Aug 06-10, 2006. doi: 10.1093/bioinformatics/btl247

Dr Lutz Krause

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