Book Chapter
Džunková, Mária (2018). Flow cytometry and direct sequencing of viruses. The human virome. (pp. 3-14) New York, NY, United States: Humana Press Inc.. doi: 10.1007/978-1-4939-8682-8_1
Journal Articles
Džunková, Mária, Low, Soo Jen, Daly, Joshua N., Deng, Li, Rinke, Christian and Hugenholtz, Philip (2019). Defining the human gut host–phage network through single-cell viral tagging. Nature Microbiology, 4 (12), 2192-2203. doi: 10.1038/s41564-019-0526-2
Low, Soo Jen, Džunková, Mária, Chaumeil, Pierre-Alain, Parks, Donovan H. and Hugenholtz, Philip (2019). Evaluation of a concatenated protein phylogeny for classification of tailed double-stranded DNA viruses belonging to the order Caudovirales. Nature Microbiology, 4 (8), 1306-1315. doi: 10.1038/s41564-019-0448-z
Džunková, Mária, Martinez-Martinez, Daniel, Gardlík, Roman, Behuliak, Michal, Janšáková, Katarína, Jiménez, Nuria, Vázquez-Castellanos, Jorge F., Martí, Jose Manuel, D’Auria, Giuseppe, Bandara, H. M.H.N., Latorre, Amparo, Celec, Peter and Moya, Andrés (2018). Oxidative stress in the oral cavity is driven by individual-specific bacterial communities. npj Biofilms and Microbiomes, 4 (1) 29, 29. doi: 10.1038/s41522-018-0072-3
Džunková, Mária, Moya, Andrés, Chen, Xinhua, Kelly, Ciaran and D’Auria, Giuseppe (2018). Detection of mixed-strain infections by FACS and ultra-low input genome sequencing. Gut Microbes, 11 (3), 1-5. doi: 10.1080/19490976.2018.1526578
Džunková, Mária, Moya, Andrés, Vázquez-Castellanos, Jorge F, Artacho, Alejandro, Chen, Xinhua, Kelly, Ciaran and D'Auria, Giuseppe (2016). Active and secretory IgA-coated bacterial fractions elucidate dysbiosis in Clostridium difficile infection. mSphere, 1 (3). doi: 10.1128/mSphere.00101-16
Džunková, Mária, D’Auria, Giuseppe and Moya, Andrés (2015). Direct sequencing of human gut virome fractions obtained by flow cytometry. Frontiers in Microbiology, 6. doi: 10.3389/fmicb.2015.00955
Simón-Soro, Áurea, D’Auria, Giuseppe, Collado, M. Carmen, Džunková, Mária, Culshaw, Shauna and Mira, Alex (2015). Revealing microbial recognition by specific antibodies. BMC Microbiology, 15 (1) 132. doi: 10.1186/s12866-015-0456-y