School of Chemistry and Molecular Biosciences

Dr Carlos Rodrigues

Honorary Fellow
School of Chemistry and Molecular Biosciences

Google Scholar profile

Publications

Journal Articles (9)

Journal Articles

Rodrigues, Carlos H. M. and Ascher, David B. (2023). CSM‐Potential2: A comprehensive deep learning platform for the analysis of protein interacting interfaces. Proteins: Structure, Function, and Bioinformatics. doi: 10.1002/prot.26615
Nguyen, Thanh Binh, de Sá, Alex G. C., Rodrigues, Carlos H. M., Pires, Douglas E. V. and Ascher, David B. (2023). LEGO-CSM: a tool for functional characterization of proteins. Bioinformatics, 39 (7) btad402, 1-4. doi: 10.1093/bioinformatics/btad402
Zhou, Yunzhuo, Pan, Qisheng, Pires, Douglas E. V., Rodrigues, Carlos H. M. and Ascher, David B. (2023). DDMut: predicting effects of mutations on protein stability using deep learning. Nucleic Acids Research, 51 (W1), W122-W128. doi: 10.1093/nar/gkad472
Morozov, Vladimir, Rodrigues, Carlos H. M. and Ascher, David B. (2023). CSM-Toxin: a web-server for predicting protein toxicity. Pharmaceutics, 15 (2) 431, 1-8. doi: 10.3390/pharmaceutics15020431
Williams, Nathan P., Rodrigues, Carlos H. M., Truong, Jia, Ascher, David B. and Holien, Jessica K. (2023). DockNet: high-throughput protein–protein interface contact prediction. Bioinformatics, 39 (1) btac797, 1-3. doi: 10.1093/bioinformatics/btac797
Zhou, Yunzhuo, Al‐Jarf, Raghad, Alavi, Azadeh, Nguyen, Thanh Binh, Rodrigues, Carlos H. M., Pires, Douglas E. V. and Ascher, David B. (2022). kinCSM : Using graph‐based signatures to predict small molecule CDK2 inhibitors. Protein Science, 31 (11) e4453, 1-11. doi: 10.1002/pro.4453
Rodrigues, Carlos H. M., Garg, Anjali, Keizer, David, Pires, Douglas E. V. and Ascher, David B. (2022). CSM‐peptides: A computational approach to rapid identification of therapeutic peptides. Protein Science, 31 (10) e4442, 1-9. doi: 10.1002/pro.4442
Karmakar, Malancha, Cicaloni, Vittoria, Rodrigues, Carlos H. M., Spiga, Ottavia, Santucci, Annalisa and Ascher, David B. (2022). HGDiscovery: an online tool providing functional and phenotypic information on novel variants of homogentisate 1,2- dioxigenase. Current Research in Structural Biology, 4, 271-277. doi: 10.1016/j.crstbi.2022.08.001
Rodrigues, Carlos H. M. and Ascher, David B (2022). CSM-Potential: mapping protein interactions and biological ligands in 3D space using geometric deep learning. Nucleic Acids Research, 50 (W1), W204-W209. doi: 10.1093/nar/gkac381