Journal Articles
Alvarez-Fraga, Laura, Phan, Minh-Duy, Goh, Kelvin G. K., Nhu, Nguyen Thi Khanh, Hancock, Steven J., Allsopp, Luke P., Peters, Kate M., Forde, Brian M., Roberts, Leah W., Sullivan, Matthew J., Totsika, Makrina, Beatson, Scott A., Ulett, Glen C. and Schembri, Mark A. (2022). Differential Afa/Dr fimbriae expression in the multidrug-resistant Escherichia coli ST131 clone. mBio, 13 (1) e03519, e0351921. doi: 10.1128/mbio.03519-21
Laverty, Kaitlin U., Stout, Jake M., Sullivan, Mitchell J., Shah, Hardik, Gill, Navdeep, Holbrook, Larry, Deikus, Gintaras, Sebra, Robert, Hughes, Timothy R., Page, Jonathan E. and Van Bakel, Harm (2019). A physical and genetic map of Cannabis sativa identifies extensive rearrangements at the THC/CBD acid synthase loci. Genome Research, 29 (1), 146-156. doi: 10.1101/gr.242594.118
Sullivan, Mitchell J, Altman, Deena R, Chacko, Kieran I, Ciferri, Brianne, Webster, Elizabeth, Pak, Theodore R, Deikus, Gintaras, Lewis-Sandari, Martha, Khan, Zenab, Beckford, Colleen, Rendo, Angela, Samaroo, Flora, Sebra, Robert, Karam-Howlin, Ramona, Dingle, Tanis, Hamula, Camille, Bashir, Ali, Schadt, Eric, Patel, Gopi, Wallach, Frances, Kasarskis, Andrew, Gibbs, Kathleen and van Bakel, Harm (2019). A complete genome screening program of clinical methicillin-resistant isolates identifies the origin and progression of a neonatal intensive care unit outbreak. Journal of Clinical Microbiology, 57 (12). doi: 10.1128/JCM.01261-19
Sause, William E, Balasubramanian, Divya, Irnov, Irnov, Copin, Richard, Sullivan, Mitchell J., Sommerfield, Alexis, Chan, Rita, Dhabaria, Avantika, Askenazi, Manor, Ueberheide, Beatrix, Shopsin, Bo, van Bakel, Harm and Torres, Victor J. (2019). The purine biosynthesis regulator PurR moonlights as a virulence regulator in Staphylococcus aureus. Proceedings of the National Academy of Sciences of the United States of America, 116 (27), 13563-13572. doi: 10.1073/pnas.1904280116
Dupper, Amy C., Sullivan, Mitchell J., Chacko, Kieran I., Mishkin, Aaron, Ciferri, Brianne, Kumaresh, Ajay, Berbel Caban, Ana, Oussenko, Irina, Beckford, Colleen, Zeitouni, Nathalie E., Sebra, Robert, Hamula, Camille, Smith, Melissa, Kasarskis, Andrew, Patel, Gopi, McBride, Russell B., van Bakel, Harm and Altman, Deena R. (2019). Blurred Molecular Epidemiological Lines Between the Two Dominant Methicillin-Resistant Staphylococcus aureus Clones. Open Forum Infectious Diseases, 6 (9). doi: 10.1093/ofid/ofz302
Altman, Deena R., Sullivan, Mitchell J., Chacko, Kieran I., Balasubramanian, Divya, Pak, Theodore R., Sause, William E., Kumar, Krishan, Sebra, Robert, Deikus, Gintaras, Attie, Oliver, Rose, Hannah, Lewis, Martha, Fulmer, Yi, Bashir, Ali, Kasarskis, Andrew, Schadt, Eric E., Richardson, Anthony R., Torres, Victor J., Shopsin, Bo and Van Bakel, Harm (2018). Genome plasticity of agr-defective staphylococcus aureus during clinical infection. Infection and Immunity, 86 (10) e00331-18. doi: 10.1128/IAI.00331-18
Chacko, Kieran I., Sullivan, Mitchell J., Beckford, Colleen, Altman, Deena R., Ciferri, Brianne, Pak, Theodore R., Sebra, Robert, Kasarskis, Andrew, Hamula, Camille L. and Van Bakel, Harm (2018). Genetic basis of emerging vancomycin, linezolid, and daptomycin heteroresistance in a case of persistent Enterococcus faecium bacteremia. Antimicrobial Agents and Chemotherapy, 62 (4) e02007-17. doi: 10.1128/AAC.02007-17
Woods, Eric C., Cohen, Gabriel M., Bressman, Eric, Lin, David, Zeitouni, Nathalie E., Beckford, Colleen, Hamula, Camille, van Bakel, Harm, Sullivan, Mitchell, Altman, Deena R. and Caplivski, Daniel (2017). Corrigendum to “community-acquired cavitary pseudomonas pneumonia linked to Use of a home humidifier”. Case Reports in Infectious Diseases, 2018, 1-4. doi: 10.1155/2018/6548482
Bashir, Ali, Attie, Oliver, Sullivan, Mitchell, Sebra, Robert, Singh, Kavindra V., Altman, Deena, Pak, Theodore, Dutta, Jayeeta, Chacko, Kieran, Webster, Elizabeth, Lewis, Martha, Hamula, Camille, Carpini, Kristin W. Delli, Murray, Barbara E., Kasarskis, Andrew, Van Bakel, Harm and Huprikar, Shirish (2017). Genomic confirmation of vancomycinresistant Enterococcus transmission from deceased donor to liver transplant recipient. PLoS ONE, 12 (3) e0170449, 1-10. doi: 10.1371/journal.pone.0170449
Woods, Eric, Cohen, Gabriel, Bressman, Eric, Lin, David, Zeitouni, Nathalie E., Beckford, Colleen, Hamula, Camille, van Bakel, Harm, Sullivan, Mitchell, Altman, Deena R. and Caplivski, Daniel (2017). Community-acquired cavitary pseudomonas pneumonia linked to use of a home humidifier. Case Reports in Infectious Diseases, 2017, 1-4. doi: 10.1155/2017/5474916
Beatson, Scott A., Ben Zakour, Nouri L., Totsika, Makrina, Forde, Brian M., Watts, Rebecca E., Mabbett, Amanda N., Szubert, Jan M., Sarkar, Sohinee, Phan, Minh-Duy, Peters, Kate M., Petty, Nicola K., Alikhan, Nabil-Fareed, Sullivan, Mitchell J., Gawthorne, Jayde A., Stanton-Cook, Mitchell, Nguyen Thi Khanh Nhu, Chong, Teik Min, Yin, Wai-Fong, Chan, Kok-Gan, Hancock, Viktoria, Ussery, David W., Ulett, Glen C. and Schembri, Mark A. (2015). Molecular analysis of asymptomatic bacteriuria Escherichia coli strain VR50 reveals adaptation to the urinary tract by gene acquisition. Infection and Immunity, 83 (5), 1749-1764. doi: 10.1128/IAI.02810-14
Bachmann, Nathan L., Sullivan, Mitchell J., Jelocnik, Martina, Myers, Garry S. A., Timms, Peter and Polkinghorne, Adam (2015). Culture-independent genome sequencing of clinical samples reveals an unexpected heterogeneity of infections by Chlamydia pecorum. Journal of Clinical Microbiology, 53 (5), 1573-1581. doi: 10.1128/JCM.03534-14
Sullivan, Mitchell J., Bachmann, Nathan L., Timms, Peter and Polkinghorne, Adam (2015). HapFlow: visualizing haplotypes in sequencing data. Bioinformatics, 32 (3), 441-443. doi: 10.1093/bioinformatics/btv551
Gilbert, Robert G., Wu, Alex C., Sullivan, Mitchell A., Sumarriva, Gonzalo E., Ersch, Natascha and Hasjim, Jovin (2013). Improving human health through understanding the complex structure of glucose polymers. Analytical and Bioanalytical Chemistry, 405 (28), 8969-8980. doi: 10.1007/s00216-013-7129-1
Woolfit, Megan, Iturbe-Ormaetxe, Inaki, Brownlie, Jeremy C., Walker, Thomas, Riegler, Markus, Seleznev, Andrei, Popovici, Jean, Rances, Edwige, Wee, Bryan A., Pavlides, Jennifer, Sullivan, Mitchell J., Beatson, Scott A., Lane, Amanda, Sidhu, Manpreet, McMeniman, Conor J., McGraw, Elizabeth A. and O'Neill, Scott L. (2013). Genomic evolution of the pathogenic Wolbachia strain, wMelPop. Genome Biology and Evolution, 5 (11), 2189-2204. doi: 10.1093/gbe/evt169
Stocker, Ann J., Rusuwa, Bosco B., Blacket, Mark J., Frentiu, Francesca D., Sullivan, Mitchell, Foley, Bradley R., Beatson, Scott, Hoffman, Ary A. and Chenoweth, Stephen F. (2012). Physical and linkage maps for Drosophila serrata, a model species for studies of clinal adaptation and sexual selection. G3: Genes, Genomes, Genetics, 2 (2), 287-297. doi: 10.1534/g3.111.001354
Sullivan, Mitchell J., Petty, Nicola K. and Beatson, Scott A. (2011). Easyfig: A genome comparison visualizer. Bioinformatics, 27 (7) btr039, 1009-1010. doi: 10.1093/bioinformatics/btr039
Beatson, Scott A., de Luna, Maria das Graças, Bachmann, Nathan L., Alikhan, Nabil-Fareed, Hanks, Kirstin R., Sullivan, Mitchell J., Wee, Bryan A., Freitas-Almeida, Angela C., dos Santos, Paula A., de Melo, Janyne T. B., Squire, Derrick J. P., Cunningham, Adam F., Fitzgerald, J. Ross and Henderson, Ian R. (2011). Genome sequence of the emerging pathogen aeromonas caviae. Journal of Bacteriology, 193 (5), 1286-1287. doi: 10.1128/JB.01337-10
Thesis
Sullivan, Mitchell (2015). Visualising the dynamic bacterial genome. PhD Thesis, School of Chemistry and Molecular Biosciences, The University of Queensland. doi: 10.14264/uql.2015.789