Dr Maria Chuvochina

Venter, Stephanus N., Rodriguez-R, Luis M., Chuvochina, Maria, Palmer, Marike, Hugenholtz, Philip and Steenkamp, Emma T. (2024). Options and considerations for validation of prokaryotic names under the SeqCode. Systematic and Applied Microbiology, 47 (6) 126554, 126554. doi: 10.1016/j.syapm.2024.126554

Jiménez, Diego Javier, Chaparro, Dayanne, Sierra, Felipe, Custer, Gordon F., Feuerriegel, Golo, Chuvochina, Maria, Diaz-Garcia, Laura, Mendes, Lucas William, Ortega Santiago, Yina Paola, Rubiano-Labrador, Carolina, Salcedo Galan, Felipe, Streit, Wolfgang R., Dini-Andreote, Francisco, Reyes, Alejandro and Rosado, Alexandre Soares (2024). Engineering the mangrove soil microbiome for selection of polyethylene terephthalate-transforming bacterial consortia. Trends in Biotechnology. doi: 10.1016/j.tibtech.2024.08.013

Arahal, David R., Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dunlap, Christopher, del Carmen Montero-Calasanz, Maria, Parker, Charles T., Vandamme, Peter, Ventosa, Antonio, Ventura, Stefano, Young, Peter and Göker, Markus (2024). Judicial Opinion 130. International Journal of Systematic and Evolutionary Microbiology, 74 (6) ARTN 006414. doi: 10.1099/ijsem.0.006414

Mussig, Aaron J., Chaumeil, Pierre-Alain, Chuvochina, Maria, Rinke, Christian, Parks, Donovan H. and Hugenholtz, Philip (2024). Putative genome contamination has minimal impact on the GTDB taxonomy. Microbial Genomics, 10 (5) 001256. doi: 10.1099/mgen.0.001256

Prabhu, Apoorva, Tule, Sanjana, Chuvochina, Maria, Bodén, Mikael, McIlroy, Simon J, Zaugg, Julian and Rinke, Christian (2024). Machine learning and metagenomics identifies uncharacterized taxa inferred to drive biogeochemical cycles in a subtropical hypereutrophic estuary. ISME Communications, 4 (1) ARTN ycae067. doi: 10.1093/ismeco/ycae067

Miliotis, Georgios, Sengupta, Pratyay, Hameed, Asif, Chuvochina, Maria, McDonagh, Francesca, Simpson, Anna C., Parker, Ceth W., Singh, Nitin K., Rekha, Punchappady D., Morris, Dearbháile, Raman, Karthik, Kyrpides, Nikos C., Hugenholtz, Philip and Venkateswaran, Kasthuri (2024). Novel spore-forming species exhibiting intrinsic resistance to third- and fourth-generation cephalosporins and description of Tigheibacillus jepli gen. nov., sp. nov. mBio, 15 (4), e0018124. doi: 10.1128/mbio.00181-24

Arahal, David R., Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Ventosa, Antonio, Young, Peter and Göker, Markus (2024). Judicial Opinion 129. International Journal of Systematic and Evolutionary Microbiology, 74 (2) ARTN 006064. doi: 10.1099/ijsem.0.006064

Whitman, William B., Chuvochina, Maria, Hedlund, Brian P., Konstantinidis, Konstantinos T., Palmer, Marike, Rodriguez‐R, Luis M., Sutcliffe, Iain and Wang, Fengping (2024). Why and how to use the SeqCode. mLife, 3 (1), 1-13. doi: 10.1002/mlf2.12092

Díaz-García, Laura, Chuvochina, Maria, Feuerriegel, Golo, Bunk, Boyke, Spröer, Cathrin, Streit, Wolfgang R., Rodriguez-R, Luis M., Overmann, Jörg and Javier Jiménez, Diego (2024). Andean soil-derived lignocellulolytic bacterial consortium as a source of novel taxa and putative plastic-active enzymes. Systematic and Applied Microbiology, 47 (1) 126485, 1-13. doi: 10.1016/j.syapm.2023.126485

Whitman, William B., Hedlund, Brian P., Palmer, Marike, Sutcliffe, Iain and Chuvochina, Maria (2023). Request for public discussion and ballot to amend SeqCode rules on priority of Candidatus names and correction of typographic and orthographic errors. ISME Communications, 3 (1) 96. doi: 10.1038/s43705-023-00303-y

de la Haba, Rafael R., Arahal, David R., Sánchez-Porro, Cristina, Chuvochina, Maria, Wittouck, Stijn, Hugenholtz, Philip and Ventosa, Antonio (2023). A long-awaited taxogenomic investigation of the family Halomonadaceae. Frontiers in Microbiology, 14 1293707, 1-28. doi: 10.3389/fmicb.2023.1293707

Chuvochina, Maria, Rinke, Christian, Mussig, Aaron, Chaumeil, Pierre-Alain, Parks, Donovan and Hugenholtz, Philip (2023). Genome Taxonomy Database and SeqCode: Microbial taxonomy and nomenclature in the age of big sequence data. Biodiversity Information Science and Standards, 7. doi: 10.3897/biss.7.111135

Chuvochina, Maria, Mussig, Aaron J., Chaumeil, Pierre-Alain, Skarshewski, Adam, Rinke, Christian, Parks, Donovan H. and Hugenholtz, Philip (2023). Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes. FEMS Microbiology Letters, 370 fnad071, 1-33. doi: 10.1093/femsle/fnad071

Oren, Aharon and Chuvochina, Maria (2023). Naming genera after geographical locations. Proposal to emend Appendix 9 of the International Code of Nomenclature of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 73 (5) 005873, 1-3. doi: 10.1099/ijsem.0.005873

Seymour, Cale O., Palmer, Marike, Becraft, Eric D., Stepanauskas, Ramunas, Friel, Ariel D., Schulz, Frederik, Woyke, Tanja, Eloe-Fadrosh, Emiley, Lai, Dengxun, Jiao, Jian-Yu, Hua, Zheng-Shuang, Liu, Lan, Lian, Zheng-Han, Li, Wen-Jun, Chuvochina, Maria, Finley, Brianna K., Koch, Benjamin J., Schwartz, Egbert, Dijkstra, Paul, Moser, Duane P., Hungate, Bruce A. and Hedlund, Brian P. (2023). Hyperactive nanobacteria with host-dependent traits pervade Omnitrophota. Nature Microbiology, 8 (4), 727-744. doi: 10.1038/s41564-022-01319-1

Arahal, David R., Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Rossello-Mora, Ramon, Ventosa, Antonio and Göker, Markus (2023). Judicial Opinion 128. International Journal of Systematic and Evolutionary Microbiology, 73 (3) 005797, 1-7. doi: 10.1099/ijsem.0.005797

Arahal, David R., Bull, Carolee T., Busse, Hans-Jürgen, Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Rossello-Mora, Ramon, Ventosa, Antonio and Göker, Markus (2023). Guidelines for interpreting the International Code of Nomenclature of Prokaryotes and for preparing a Request for an Opinion. International Journal of Systematic and Evolutionary Microbiology, 73 (3) 005782, 1-20. doi: 10.1099/ijsem.0.005782

Hedlund, Brian P., Chuvochina, Maria, Hugenholtz, Philip, Konstantinidis, Konstantinos T., Murray, Alison E., Palmer, Marike, Parks, Donovan H., Probst, Alexander J., Reysenbach, Anna-Louise, Rodriguez-R, Luis M., Rossello-Mora, Ramon, Sutcliffe, Iain C., Venter, Stephanus N. and Whitman, William B. (2022). SeqCode: a nomenclatural code for prokaryotes described from sequence data. Nature Microbiology, 7 (10), 1702-1708. doi: 10.1038/s41564-022-01214-9

Whitman, William B., Chuvochina, Maria, Hedlund, Brian P., Hugenholtz, Philip, Konstantinidis, Konstantinos T., Murray, Alison E., Palmer, Marike, Parks, Donovan H., Probst, Alexander J., Reysenbach, Anna-Louise, Rodriguez-R, Luis M., Rossello-Mora, Ramon, Sutcliffe, Iain and Venter, Stephanus N. (2022). Development of the SeqCode: A proposed nomenclatural code for uncultivated prokaryotes with DNA sequences as type. Systematic and Applied Microbiology, 45 (5) 126305, 1-8. doi: 10.1016/j.syapm.2022.126305

Arahal, David R., Busse, Hans-Jürgen, Bull, Carolee T., Christensen, Henrik, Chuvochina, Maria, Dedysh, Svetlana N., Fournier, Pierre-Edouard, Konstantinidis, Konstantinos T., Parker, Charles T., Rosselló-Móra, Ramon, Ventosa, Antonio and Göker, Markus (2022). Judicial Opinions 103–111. International Journal of Systematic and Evolutionary Microbiology, 72 (1) 005197. doi: 10.1099/ijsem.0.005197

Parks, Donovan H., Chuvochina, Maria, Rinke, Christian, Mussig, Aaron J., Chaumeil, Pierre-Alain and Hugenholtz, Philip (2022). GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy. Nucleic Acids Research, 50 (D1), D785-D794. doi: 10.1093/nar/gkab776

Rinke, Christian, Chuvochina, Maria, Mussig, Aaron J., Chaumeil, Pierre-Alain, Davín, Adrián A., Waite, David W., Whitman, William B., Parks, Donovan H. and Hugenholtz, Philip (2021). A standardized archaeal taxonomy for the Genome Taxonomy Database. Nature Microbiology, 6 (7), 946-959. doi: 10.1038/s41564-021-00918-8

Hugenholtz, Philip, Chuvochina, Maria, Oren, Aharon, Parks, Donovan H. and Soo, Rochelle M. (2021). Prokaryotic taxonomy and nomenclature in the age of big sequence data. The ISME Journal, 15 (7), 1879-1892. doi: 10.1038/s41396-021-00941-x

Ji, Mukan, Williams, Timothy J., Montgomery, Kate, Wong, Hon Lun, Zaugg, Julian, Berengut, Jonathan F., Bissett, Andrew, Chuvochina, Maria, Hugenholtz, Philip and Ferrari, Belinda C. (2021). Candidatus Eremiobacterota, a metabolically and phylogenetically diverse terrestrial phylum with acid-tolerant adaptations. The ISME Journal, 15 (9), 2692-2707. doi: 10.1038/s41396-021-00944-8

Chuvochina, Maria, Adame, Maria Fernanda, Guyot, Adrien, Lovelock, Catherine, Lockington, David, Gamboa-Cutz, Julieta N. and Dennis, Paul G. (2021). Drivers of bacterial diversity along a natural transect from freshwater to saline subtropical wetlands. Science of the Total Environment, 759 143455, 1-8. doi: 10.1016/j.scitotenv.2020.143455

Schriml, Lynn M., Chuvochina, Maria, Davies, Neil, Eloe-Fadrosh, Emiley A., Finn, Robert D., Hugenholtz, Philip, Hunter, Christopher I., Hurwitz, Bonnie L., Kyrpides, Nikos C., Meyer, Folker, Mizrachi, Ilene Karsch, Sansone, Susanna-Assunta, Sutton, Granger, Tighe, Scott and Walls, Ramona (2020). COVID-19 pandemic reveals the peril of ignoring metadata standards. Scientific Data, 7 (1) 188, 188. doi: 10.1038/s41597-020-0524-5

Parks, Donovan H., Chuvochina, Maria, Chaumeil, Pierre-Alain, Rinke, Christian, Mussig, Aaron J. and Hugenholtz, Philip (2020). Author Correction: A complete domain-to-species taxonomy for Bacteria and Archaea (Nature Biotechnology, (2020), 38, 9, (1079-1086), 10.1038/s41587-020-0501-8). Nature Biotechnology, 38 (9), 1098-1098. doi: 10.1038/s41587-020-0539-7

Oren, Aharon, Garrity, George M., Parker, Charles T., Chuvochina, Maria and Trujillo, Martha E. (2020). Lists of names of prokaryotic Candidatus taxa. International Journal of Systematic and Evolutionary Microbiology, 70 (7) 003789, 3956-4042. doi: 10.1099/ijsem.0.003789

Parks, Donovan H., Chuvochina, Maria, Chaumeil, Pierre-Alain, Rinke, Christian, Mussig, Aaron J. and Hugenholtz, Philip (2020). A complete domain-to-species taxonomy for bacteria and archaea. Nature Biotechnology, 38 (9), 1098-1098. doi: 10.1038/s41587-020-0501-8

Rinke, Christian, Rubino, Francesco, Messer, Lauren F., Youssef, Noha, Parks, Donovan H., Chuvochina, Maria, Brown, Mark, Jeffries, Thomas, Tyson, Gene W., Seymour, Justin R. and Hugenholtz, Philip (2020). Correction: A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The ISME Journal, 14 (3), 878-878. doi: 10.1038/s41396-019-0556-z

Waite, David W., Chuvochina, Maria, Pelikan, Claus, Parks, Donovan H., Yilmaz, Pelin, Wagner, Michael, Loy, Alexander, Naganuma, Takeshi, Nakai, Ryosuke, Whitman, William B., Hahn, Martin W., Kuever, Jan and Hugenholtz, Philip (2020). Proposal to reclassify the proteobacterial classes Deltaproteobacteria and Oligoflexia, and the phylum Thermodesulfobacteria into four phyla reflecting major functional capabilities. International Journal of Systematic and Evolutionary Microbiology, 70 (11) 004213, 5972-6016. doi: 10.1099/ijsem.0.004213

Oren, Aharon, Chuvochina, Maria and Schink, Bernhard (2019). The use of Greek and Latin prepositions and prefixes in compound names: proposed emendation of Appendix 9 of the International Code of Nomenclature of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 69 (6), 1831-1832. doi: 10.1099/ijsem.0.003389

Oren, Aharon, Chuvochina, Maria, Schink, Bernhard and Ventura, Stefano (2019). Naming classes of prokaryotes based on the rules of Latin grammar. International Journal of Systematic and Evolutionary Microbiology, 69 (5) 003311, 1526-1527. doi: 10.1099/ijsem.0.003311

Dong, Xiyang, Greening, Chris, Rattray, Jayne E., Chakraborty, Anirban, Chuvochina, Maria, Mayumi, Daisuke, Dolfing, Jan, Li, Carmen, Brooks, James M., Bernard, Bernie B., Groves, Ryan A., Lewis, Ian A. and Hubert, Casey R. J. (2019). Metabolic potential of uncultured bacteria and archaea associated with petroleum seepage in deep-sea sediments. Nature Communications, 10 (1) 1816, 1-12. doi: 10.1038/s41467-019-09747-0

Oren, Aharon, Chuvochina, Maria and Ventura, Stefano (2019). Formation of compound generic names based on personal names: a proposal for emendation of Appendix 9 of the International Code of Nomenclature of Prokaryotes. International Journal of Systematic and Evolutionary Microbiology, 69 (2) 003192, 594-596. doi: 10.1099/ijsem.0.003192

Chuvochina, Maria, Rinke, Christian, Parks, Donovan H., Rappé, Michael S., Tyson, Gene W., Yilmaz, Pelin, Whitman, William B. and Hugenholtz, Philip (2019). The importance of designating type material for uncultured taxa. Systematic and Applied Microbiology, 42 (1), 15-21. doi: 10.1016/j.syapm.2018.07.003

Rinke, Christian, Rubino, Francesco, Messer, Lauren F., Youssef, Noha, Parks, Donovan H., Chuvochina, Maria, Brown, Mark, Jeffries, Thomas, Tyson, Gene W., Seymour, Justin R. and Hugenholtz, Philip (2018). A phylogenomic and ecological analysis of the globally abundant Marine Group II archaea (Ca. Poseidoniales ord. nov.). The ISME Journal, 13 (3), 663-675. doi: 10.1038/s41396-018-0282-y

Parks, Donovan H., Chuvochina, Maria, Waite, David W., Rinke, Christian, Skarshewski, Adam, Chaumeil, Pierre-Alain and Hugenholtz, Philip (2018). A standardized bacterial taxonomy based on genome phylogeny substantially revises the tree of life. Nature Biotechnology, 36 (10), 996-1004. doi: 10.1038/nbt.4229

Whitman, William B, Oren, Aharon, Chuvochina, Maria, da Costa, Milton S, Garrity, George M, Rainey, Fred A, Rossello-Mora, Ramon, Schink, Bernhard, Sutcliffe, Iain, Trujillo, Martha E and Ventura, Stefano (2018). Proposal of the suffix -ota to denote phyla. Addendum to 'Proposal to include the rank of phylum in the International Code of Nomenclature of Prokaryotes'. International Journal of Systematic and Evolutionary Microbiology, 68 (3) 002593, 967-969. doi: 10.1099/ijsem.0.002593

Parks, Donovan H., Rinke, Christian, Chuvochina, Maria, Chaumeil, Pierre-Alain, Woodcroft, Ben J., Evans, Paul N., Hugenholtz, Philip and Tyson, Gene W. (2017). Author correction: recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology, 3 (2), 253-253. doi: 10.1038/s41564-017-0083-5

Parks, Donovan H., Rinke, Christian, Chuvochina, Maria, Chaumeil, Pierre-Alain, Woodcroft, Ben J., Evans, Paul N., Hugenholtz, Philip and Tyson, Gene W. (2017). Recovery of nearly 8,000 metagenome-assembled genomes substantially expands the tree of life. Nature Microbiology, 2 (11), 1533-1542. doi: 10.1038/s41564-017-0012-7

Karlov, Denis S., Marie, Dominique, Sumbatyan, Danil A., Chuvochina, Maria S., Kulichevskaya, Irina S., Alekhina, Irina A. and Bulat, Sergey A. (2016). Microbial communities within the water column of freshwater Lake Radok, East Antarctica: predominant 16S rDNA phylotypes and bacterial cultures. Polar Biology, 40 (4), 1-14. doi: 10.1007/s00300-016-2008-9

Chuvochina, Maria S., Marie, Dominique, Chevaillier, Servanne, Petit, Jean-Robert, Normand, Philippe, Alekhina, Irina A. and Bulat, Sergey A. (2011). Community variability of bacteria in alpine snow (Mont Blanc) containing Saharan dust deposition and their snow colonisation potential. Microbes and Environments, 26 (3), 237-247. doi: 10.1264/jsme2.ME11116

Karlov, D. S., Marie, D., Chuvochina, M. S., Alekhina, I. A. and Bulat, S. A. (2011). Microbial communities of water column of Lake Radok, East Antarctica, dominated by abundant actinobacterium "Candidatus Planktophila limnetica". Microbiology, 80 (4), 576-579. doi: 10.1134/S0026261711040084

Chuvochina, M. S., Alekhina, I. A., Normand, P., Petit, J. R. and Bulat, S. A. (2011). Three events of Saharan dust deposition on the Mont Blanc glacier associated with different snow-colonizing bacterial phylotypes. Microbiology, 80 (1), 125-131. doi: 10.1134/S0026261711010061

Karlov, D S, Marie, D, Chuvochina, M S, Alekhina, I A and Bulat, S A (2011). Microbial communities of water column of Lake Radok, East Antarctica, dominated by abundant actinobacterium “Candidatus Planktophila limnetica”. Mikrobiologiia, 80 (4), 571-4. doi: 10.1134/S0026261711040084

Arkhipova, O. V., Chuvochina, M. S. and Trutko, S. M. (2009). Cytochromes c of the anaerobic methacrylate reducer Geobacter sulfurreducens AM-1. Microbiology, 78 (3), 296-303. doi: 10.1134/S0026261709030060

Arkhipova, O V, Chuvochina, M S and Trutko, S M (2009). Cytochromes c of anaerobic methacrylate-reducing Geobacter sulfurreducens AM-1. Mikrobiologiia, 78 (3), 334-41.

Dr Maria Chuvochina

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Journal Articles